Commits · show · UMR-ASTRE / asf-challenge

Jan 11, 2021
- Submission_3: Update details on culling protocol. · aeadde92
  Facundo Muñoz authored 4 years ago
  
  2 tags
  
  aeadde92
- Submission 3. Include farm assessment from previous submission. · 2d9f7539
  Facundo Muñoz authored 4 years ago
  
  2d9f7539
Jan 10, 2021
- pdf & html updates · 067b1a39
  David Pleydell authored 4 years ago
  
  067b1a39
- Updates in submission_3.Rmd · 91fe6f92
  David Pleydell authored 4 years ago
  
  91fe6f92
- Iday230_Fence1_Army1_nSim10000_temporal.csv · bcc4daeb
  David Pleydell authored 4 years ago
  
  bcc4daeb
- Added mapAreaR3 to account for southern limit at day 230 · e6e621c7
  David Pleydell authored 4 years ago
  
  e6e621c7
- Bug fixes · 19fd3b7b
  David Pleydell authored 4 years ago
  
  19fd3b7b
- model12/MCMCall1000/simsProbs/Iday230_Fence1_Army1_nSim10000.csv · dcc220a9
  David Pleydell authored 4 years ago
  
  dcc220a9
- Added flag to setupSimFromMCMC_ForExtinctionProb. Added script... · daa82aac
  David Pleydell authored 4 years ago
  
  Added flag to setupSimFromMCMC_ForExtinctionProb. Added script simWildBoarFromMCMC12_probExtinct.R for model 12. Edits to submission_3.Rmd.
  daa82aac
- Added setupSimFromMCMC_ForExtinctionProb - provides posterior distribution of... · 74da994c
  David Pleydell authored 4 years ago
  
  Added setupSimFromMCMC_ForExtinctionProb - provides posterior distribution of number IWB at day 230.
  74da994c
Jan 09, 2021
- Updates in submission_3.Rmd & target name changes for WB analysis. · fabfbb68
  David Pleydell authored 4 years ago
  
  fabfbb68
- Added csv files generated by simWildBoarFromMCMC12.R · cdcfec3d
  David Pleydell authored 4 years ago
  
  cdcfec3d
- Edits in submission_3.Rmd. Also modified some target names to distiguish report 2 and 3 versions. · 5ebb1a0e
  David Pleydell authored 4 years ago
  
  5ebb1a0e
Jan 08, 2021
- Edits in simWildBoarFromMCMC12.R · 46eb85be
  David Pleydell authored 4 years ago
  
  46eb85be
- Bug fix in functions.R sourcing epidemic_threshold.R · a2527f57
  David Pleydell authored 4 years ago
  
  a2527f57
- Emacs removed trailing white space in submission_3.Rmd · e43a3fcb
  David Pleydell authored 4 years ago
  
  e43a3fcb
- Bug fix in mapWildBoarCasesDayX & submission_2_evaluation.Rmd · b1611231
  David Pleydell authored 4 years ago
  
  b1611231
- Added gtsummary to packages. · 3216d78e
  David Pleydell authored 4 years ago
  
  3216d78e
- Merge branch 'master' into MODEL11 · 1fca6061
  David Pleydell authored 4 years ago
  
  1fca6061
- CSV files for model12 MCMC output · bae97c55
  David Pleydell authored 4 years ago
  
  bae97c55
- Updates in model12/combineMCMCs.R · 52d48e3b
  David Pleydell authored 4 years ago
  
  52d48e3b
- Update reports. · c12dbaf2
  Facundo Muñoz authored 4 years ago
  
  No changes in predictions.
  c12dbaf2
- Correct preventive culling policy due to WB. · 59798372
  Facundo Muñoz authored 4 years ago
  
  - Implemented after suspicion date 90 - Preventive culling 6 days after confirmation.
  59798372
Jan 05, 2021
- Update complied reports. · 35aaa9c0
  Facundo Muñoz authored 4 years ago
  
  35aaa9c0
- Submission 3: Fix some wording in captions. · 50febe96
  Facundo Muñoz authored 4 years ago
  
  50febe96
Dec 23, 2020
- Update Readme. · 606d0793
  Facundo Muñoz authored 4 years ago
  
  606d0793
- Submission 3 report. Farms section. · c66145af
  Facundo Muñoz authored 4 years ago
  
  c66145af
- Report on survival model. · bee42146
  Facundo Muñoz authored 4 years ago
  
  bee42146
- Submission 3: Results with kde exposition measure and network analysis. · 15761c80
  Facundo Muñoz authored 4 years ago
  
  15761c80
Dec 22, 2020
- Submission 3: predictions on farms. · c24b3ffb
  Facundo Muñoz authored 4 years ago
  
  c24b3ffb
- Predict 4 months in the last stage. · 08aae338
  Facundo Muñoz authored 4 years ago
  
  - Improve code using helper functions like day_suffix().
  08aae338
- Basic diagnostics of glm model. · 90d13f61
  Facundo Muñoz authored 4 years ago
  
  90d13f61
- Remove copy of submission 2. · 4dd4b82f
  Facundo Muñoz authored 4 years ago
  
  4dd4b82f
- Report wild boar case density per 10 k square km. · c406b67e
  Facundo Muñoz authored 4 years ago
  
  c406b67e
- Conslusions measure of exposure. · ab57f533
  Facundo Muñoz authored 4 years ago
  
  ab57f533
- Fix bug in culling strategy. · aeefe27c
  Facundo Muñoz authored 4 years ago
  
  aeefe27c
- Time-to-event model: the daily level of exposure has little predictive power. · 04b38814
  Facundo Muñoz authored 4 years ago
  
  04b38814
- is_culled(): fix example. · 83d434bd
  Facundo Muñoz authored 4 years ago
  
  83d434bd
Dec 18, 2020
- Merge branch 'master' of forgemia.inra.fr:umr-astre/asf-challenge · a5ee2420
  Facundo Muñoz authored 4 years ago
  
  a5ee2420
- Fix is_culled(): avoid the use of default cullings data. · 74a70801
  Facundo Muñoz authored 4 years ago
  
  74a70801