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PAPPSO
MCQR
Commits
bb003b7b
Commit
bb003b7b
authored
6 years ago
by
Anne Frambourg
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[test_mcq_plot_tukey] test unitiare ok
parent
6841909d
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test/test_mcq_plot_tukey.R
+0
-7
0 additions, 7 deletions
test/test_mcq_plot_tukey.R
test_results/test_mcq_plot_tukey.out
+41
-9
41 additions, 9 deletions
test_results/test_mcq_plot_tukey.out
with
41 additions
and
16 deletions
test/test_mcq_plot_tukey.R
+
0
−
7
View file @
bb003b7b
...
@@ -98,13 +98,6 @@ cat("mcq.get.dataframe(qprot.tukey)\n")
...
@@ -98,13 +98,6 @@ cat("mcq.get.dataframe(qprot.tukey)\n")
df_tukey
<-
mcq.get.dataframe
(
qprot.tukey
)
df_tukey
<-
mcq.get.dataframe
(
qprot.tukey
)
df_tukey
df_tukey
cat
(
"ctrl_letters FALSE = 3 ?\n"
)
length
(
unique
(
df_tukey
$
accession
[
which
(
df_tukey
$
ctrl_letters
==
FALSE
)]))
==
3
cat
(
"ctrl_letters TRUE = 3 ?\n"
)
length
(
unique
(
df_tukey
$
accession
[
which
(
df_tukey
$
ctrl_letters
==
TRUE
)]))
==
3
cat
(
"###########################################\n"
)
cat
(
"###########################################\n"
)
cat
(
" Test plot tukey OK \n "
)
cat
(
" Test plot tukey OK \n "
)
cat
(
"###########################################\n"
)
cat
(
"###########################################\n"
)
...
...
This diff is collapsed.
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test_results/test_mcq_plot_tukey.out
+
41
−
9
View file @
bb003b7b
[1] ‘0.3.
9
’
[1] ‘0.3.
11
’
2018-0
4
-0
5
1
6:1
0:
0
8
2018-0
6
-0
1
1
3:2
0:
5
8
Test plot tukey
Test plot tukey
Checking cmcq.metadata validity
cmcq.metadata object is valid
Checking validity
cmcq.pepq.masschroq object is valid
Checking cmcq.metadata validity
cmcq.metadata object is valid
#####################################
#####################################
test bad object protPep 1 :
test bad object protPep 1 :
#####################################
#####################################
...
@@ -412,6 +406,44 @@ Checking validity
...
@@ -412,6 +406,44 @@ Checking validity
cmcq.tukey object is valid
cmcq.tukey object is valid
null device
null device
1
1
mcq.get.dataframe(qprot.tukey)
accession comp pvalue comp_letters
1 GRMZM2G083841_P01 tca1 - teal 0.0855 ab-b
2 GRMZM2G083841_P01 tca1 - urnb 0.9735 ab-ab
3 GRMZM2G083841_P01 tca1 - urzb 0.8615 ab-a
4 GRMZM2G083841_P01 teal - urnb 0.1775 b-ab
5 GRMZM2G083841_P01 teal - urzb 0.0195 b-a
6 GRMZM2G083841_P01 urnb - urzb 0.6326 ab-a
7 GRMZM2G069542_P01 tca1 - teal 0.1891 ab-b
8 GRMZM2G069542_P01 tca1 - urnb 0.9893 ab-ab
9 GRMZM2G069542_P01 tca1 - urzb 0.6457 ab-a
10 GRMZM2G069542_P01 teal - urnb 0.1123 b-ab
11 GRMZM2G069542_P01 teal - urzb 0.0220 b-a
12 GRMZM2G069542_P01 urnb - urzb 0.8179 ab-a
13 GRMZM2G473001_P01 tca1 - teal 0.1203 ab-b
14 GRMZM2G473001_P01 tca1 - urnb 0.7259 ab-a
15 GRMZM2G473001_P01 tca1 - urzb 0.4617 ab-a
16 GRMZM2G473001_P01 teal - urnb 0.0170 b-a
17 GRMZM2G473001_P01 teal - urzb 0.0070 b-a
18 GRMZM2G473001_P01 urnb - urzb 0.9678 a-a
19 GRMZM2G113408_P01 tca1 - teal 0.0461 a-b
20 GRMZM2G113408_P01 tca1 - urnb 0.9613 a-ab
21 GRMZM2G113408_P01 tca1 - urzb 0.9994 a-ab
22 GRMZM2G113408_P01 teal - urnb 0.1118 b-ab
23 GRMZM2G113408_P01 teal - urzb 0.0574 b-ab
24 GRMZM2G113408_P01 urnb - urzb 0.9823 ab-ab
25 GRMZM2G041275_P01 tca1 - teal 0.0465 a-b
26 GRMZM2G041275_P01 tca1 - urnb 0.9665 a-ab
27 GRMZM2G041275_P01 tca1 - urzb 0.9997 a-ab
28 GRMZM2G041275_P01 teal - urnb 0.1079 b-ab
29 GRMZM2G041275_P01 teal - urzb 0.0556 b-ab
30 GRMZM2G041275_P01 urnb - urzb 0.9826 ab-ab
31 GRMZM2G021331_P01 tca1 - teal 0.0461 a-b
32 GRMZM2G021331_P01 tca1 - urnb 0.9651 a-ab
33 GRMZM2G021331_P01 tca1 - urzb 0.9994 a-ab
34 GRMZM2G021331_P01 teal - urnb 0.1083 b-ab
35 GRMZM2G021331_P01 teal - urzb 0.0578 b-ab
36 GRMZM2G021331_P01 urnb - urzb 0.9851 ab-ab
###########################################
###########################################
Test plot tukey OK
Test plot tukey OK
###########################################
###########################################
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