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Commit a9c5ac35 authored by Jules Sabban's avatar Jules Sabban
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SortmeRNA runs faster

	Ref: #109
parent dd32059f
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1 merge request!23Merge for milestone "Next from V1.20.0"
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......@@ -324,6 +324,10 @@ process {
module = toolsModuleHash['SEQTK']
}
withName: ADD_MULTIQC {
errorStrategy = 'ignore'
}
withName: MULTIQC {
ext.args = [
"--config ${baseDir}/assets/multiqc_config.yaml",
......@@ -344,9 +348,9 @@ process {
withName: SORTMERNA {
module = toolsModuleHash['SORTMERNA']
memory = { checkMax( 10.GB * task.attempt * params.resource_factor, 'memory' ) }
time = { checkMax( 10.h * task.attempt, 'time' ) }
cpus = { checkMax( 1 * task.attempt, 'cpus' ) }
memory = { checkMax( 30.GB * task.attempt * params.resource_factor, 'memory' ) }
time = { checkMax( 3.h * task.attempt, 'time' ) }
cpus = { checkMax( 28 * task.attempt, 'cpus' ) }
publishDir = [
path: "${params.outdir}/rRNA",
......
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